PathWave-package {PathWave}R Documentation

Performs an enrichment analysis on optimally ordered graphs.

Description

The package PathWave includes functions to perform an enrichment analysis on optimally ordered graphs by applying the Haar wavelet transform. The enable the parsing of KEGG xml files, construction of adjacency marices, generation of LP solver readable files, parsing of the optimisation results and the enrichment analysis.

Details

Package: PathWave
Type: Package
Version: 1.0
Date: 2009-09-16
License: GPL (>=2)
The package enables to apply the following work flow: pwKEGGxml(): parse KEGG xml files
pwAdjMatrices(): build adjacency matrices
pwLPFiles(): generate files for the arrangement problem, that can be read by LP solver
pwOptGrids(): build optimised grids
pathWave(): perform analysis

Author(s)

Gunnar Schramm, Stefan Wiesberg Maintainer: Gunnar Schramm <g.schramm@dkfz.de>

References

tba


[Package PathWave version 1.0 Index]